Safee Ullah Chaudhary received his B.S. in computer systems engineering from the Ghulam Ishaq Khan Institute of Engineering Sciences and Technology, Topi, Pakistan in 2002. He spent the next four years at Ultimus Inc (HQ NC) serving in the software development group. He was the team leader for design and development of Ultimus XML Formula Engine. He then proceeded to South Korea for graduate studies and obtained an M.S. and Ph.D. in 2008 and 2013, respectively. His doctoral research at the Department of Bio. & Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST), was focused on computational modelling of multiscale cancer systems biology. He took an agents-based (multi-agent) approach to model tumorigenesis and uncovered the role of cell death in Warburg Effect. This work also led to the development of Electronic Cancer System (ELECANS), which is a next-generation modelling platform for applications in cancer systems biology. In 2014, he joined the Department of Biology at LUMS where he established the Biomedical Informatics Research Laboratory (BIRL) which is now involved in the development of cutting edge techniques and software for applications in computational proteomics, systems biology and mobile health.

For more information on his research group, please visit Biomedical Informatics Research Laboratory (BIRL).

Title Publication Author Year
An evaluation of lipid profile and pro-inflammatory cytokines as determinants of cardiovascular disease in those with diabetes: a study on a Mexican American cohort Scientific Reports 2021
Author Correction: An evaluation of lipid profile and pro-inflammatory cytokines as determinants of cardiovascular disease in those with diabetes: a study on a Mexican American cohort (Scientific Reports, (2021), 11, 1, (2435), 10.1038/s41598-021-81730-6) Scientific Reports 2021
Expression of cyanobacterial genes enhanced CO2 assimilation and biomass production in transgenic Arabidopsis thaliana PeerJ 2021
H-NMR-based metabolomics: An integrated approach for the detection of the adulteration in chicken, chevon, beef and donkey meat Molecules 2021
A Personalized Therapeutics Approach Using an In Silico Drosophila Patient Model Reveals Optimal Chemo- and Targeted Therapy Combinations for Colorectal Cancer Frontiers in Oncology 2021
PERCEPTRON: An open-source GPU-accelerated proteoform identification pipeline for top-down proteomics Nucleic Acids Research 2021
Host biomarkers for monitoring therapeutic response in extrapulmonary tuberculosis Cytokine 2021
CRISPR-Cas13a mediated targeting of hepatitis C virus internal-ribosomal entry site (IRES) as an effective antiviral strategy Biomedicine and Pharmacotherapy 2021
Trends in antimicrobial resistance amongst pathogens isolated from blood and cerebrospinal fluid cultures in Pakistan (2011-2015): A retrospective cross-sectional study PLoS ONE 2021
A cyanobacterial photorespiratory bypass model to enhance photosynthesis by rerouting photorespiratory pathway in C3 plants Scientific Reports 2020
SPECTRUM - A MATLAB Toolbox for Proteoform Identification from Top-Down Proteomics Data Scientific reports 2019
Evolution of efficacious pangenotypic hepatitis C virus therapies Medicinal Research Reviews 2019
Estimation of hepatitis C prevalence in the Punjab province of Pakistan: A retrospective study on general population PLoS ONE 2019
ATLANTIS - Attractor Landscape Analysis Toolbox for Cell Fate Discovery and Reprogramming Scientific Reports 2018
Reduced metabolites of nitroaromatics are distributed in the environment via the food chain Journal of Hazardous Materials 2018
A functional magnetic resonance imaging investigation of visual hallucinations in the human striate cortex Behavioral and Brain Functions 2016
Expression of Cucumber mosaic virus suppressor 2b alters FWA methylation and its siRNA accumulation in Arabidopsis thaliana Biology Open 2016
A novel method for detection of voxels for decision making: An fMRI study International Journal of Imaging Systems and Technology 2016
Towards providing full spectrum antenatal health care in low and middle income countries HEALTHINF 2016 - 9th International Conference on Health Informatics, Proceedings; Part of 9th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2016 2016
Starvation-Induced Dietary Behaviour in Drosophila melanogaster Larvae and Adults Scientific Reports 2015
A slice-wise latent structure regression method for the analysis of functional magnetic resonance imaging data Concepts in Magnetic Resonance Part A: Bridging Education and Research 2013
ELECANS - An integrated model development environment for multiscale cancer systems biology Bioinformatics 2013
Multiscale modeling of tumorigenesis induced by mitochondrial incapacitation in cell death IEEE Transactions on Biomedical Engineering 2011
Computational strategies for protein quantitation in 2D electrophoresis gel image processor for matlab Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies, FBIT 2007 2007